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arhgef10la Rho guanine nucleotide exchange factor (GEF) 10-like a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100701736, updated on 8-Mar-2024

Summary

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Gene symbol
arhgef10la
Gene description
Rho guanine nucleotide exchange factor (GEF) 10-like a
See related
Ensembl:ENSONIG00000000627
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
arhgef10l
Expression
Broad expression in brain (RPKM 9.1), testis (RPKM 4.4) and 7 other tissues See more
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
28
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (11514282..11626899, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (22603342..22715975, complement)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102078405 Neighboring gene uncharacterized LOC109202146 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene chromodomain helicase DNA binding protein 5 Neighboring gene ring finger protein 207a Neighboring gene ribosomal protein L22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SREBP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of stress fiber assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rho guanine nucleotide exchange factor 10-like protein
Names
Rho guanine nucleotide exchange factor 10 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    11514282..11626899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013272861.3 → XP_013128315.1  rho guanine nucleotide exchange factor 10-like protein isoform X2

    UniProtKB/TrEMBL
    A0A669F035, I3IW06
    Related
    ENSONIP00000000796.2, ENSONIT00000000795.2
    Conserved Domains (2) summary
    pfam00621
    Location:341 → 519
    RhoGEF; RhoGEF domain
    pfam12235
    Location:1150 → 1244
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal

  2. XM_005469644.4 → XP_005469701.1  rho guanine nucleotide exchange factor 10-like protein isoform X3

    UniProtKB/TrEMBL
    A0A669F035
    Related
    ENSONIP00000076507.1, ENSONIT00000065181.1
    Conserved Domains (2) summary
    pfam00621
    Location:310 → 488
    RhoGEF; RhoGEF domain
    pfam12235
    Location:1119 → 1213
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal

  3. XM_005469643.4 → XP_005469700.1  rho guanine nucleotide exchange factor 10-like protein isoform X1

    UniProtKB/TrEMBL
    A0A669F035
    Conserved Domains (2) summary
    pfam00621
    Location:342 → 520
    RhoGEF; RhoGEF domain
    pfam12235
    Location:1151 → 1245
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal

  4. XM_019359106.2 → XP_019214651.1  rho guanine nucleotide exchange factor 10-like protein isoform X4

    UniProtKB/TrEMBL
    A0A669CNV1
    Related
    ENSONIP00000048114.1, ENSONIT00000046646.1
Nucleotide Protein
Heading Accession and Version

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