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slc35f3b solute carrier family 35 member F3b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100700890, updated on 8-Mar-2024

Summary

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Gene symbol
slc35f3b
Gene description
solute carrier family 35 member F3b
See related
Ensembl:ENSONIG00000038716
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
slc35f3
Expression
Biased expression in brain (RPKM 7.8), testis (RPKM 3.8) and 3 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See slc35f3b in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
9
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (20713316..20765434, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (12795738..12847848, complement)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene TAR (HIV-1) RNA binding protein 1 Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene uncharacterized LOC112841972 Neighboring gene potassium channel, subfamily K, member 1b Neighboring gene mitogen-activated protein kinase kinase kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative thiamine transporter SLC35F3
Names
solute carrier family 35 member F3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    20713316..20765434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005474044.3 → XP_005474101.1  putative thiamine transporter SLC35F3 isoform X1

    See identical proteins and their annotated locations for XP_005474101.1

    UniProtKB/TrEMBL
    A0A669CLV8, A0A669DQM9
    Related
    ENSONIP00000060771.1, ENSONIT00000072298.1
    Conserved Domains (2) summary
    pfam06027
    Location:245 → 459
    SLC35F; Solute carrier family 35
    pfam00892
    Location:155 → 311
    EamA; EamA-like transporter family

  2. XM_005474045.4 → XP_005474102.1  putative thiamine transporter SLC35F3 isoform X2

    See identical proteins and their annotated locations for XP_005474102.1

    UniProtKB/TrEMBL
    A0A669D128
    Related
    ENSONIP00000052100.1, ENSONIT00000033559.1
    Conserved Domains (2) summary
    pfam06027
    Location:162 → 376
    SLC35F; Solute carrier family 35
    pfam00892
    Location:72 → 228
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version

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