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papln papilin, proteoglycan-like sulfated glycoprotein [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100696969, updated on 13-Jul-2014
Gene symbol
papln
Gene description
papilin, proteoglycan-like sulfated glycoprotein
See related
Ensembl:ENSONIG00000000376
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
See papln in MapViewer
Location:
chromosome: LG19
Exon count:
27
Annotation release Status Assembly LG Location
101 current Orenil1.1 (GCF_000188235.2) LG19 NC_022217.1 (10272745..10296886)

Linkage Group LG19 - NC_022217.1Genomic Context describing neighboring genes Neighboring gene enhancer of rudimentary homolog Neighboring gene presenilin-1-like Neighboring gene T-cell receptor beta-2 chain C region-like Neighboring gene solute carrier family 2, facilitated glucose transporter member 1-like Neighboring gene coiled-coil domain-containing protein 177-like

Genomic Sequence:
NC_022217.1 chromosome LG19 reference Orenil1.1 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Names
papilin, proteoglycan-like sulfated glycoprotein

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Orenil1.1 Primary Assembly

Genomic

  1. NC_022217.1 

    Range
    10272745..10296886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005477417.1XP_005477474.1  

    Conserved Domains (8) summary
    cd00096
    Location:10811145
    Ig; Immunoglobulin domain
    smart00408
    Location:9841045
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:2475
    TSP1; Thrombospondin type 1 repeats
    cd00109
    Location:705758
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    pfam05986
    Location:178293
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam07679
    Location:10631148
    I-set; Immunoglobulin I-set domain
    pfam08686
    Location:11611195
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:870951
    Ig; Immunoglobulin domain