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chl1b cell adhesion molecule L1-like b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100696077, updated on 8-Mar-2024

Summary

Gene symbol
chl1b
Gene description
cell adhesion molecule L1-like b
See related
Ensembl:ENSONIG00000020259
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
chl1
Expression
Biased expression in testis (RPKM 19.1), brain (RPKM 8.9) and 3 other tissues See more
Orthologs
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Genomic context

Location:
chromosome: LG5
Exon count:
32
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (32977236..33047670)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (5871656..5942137, complement)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112846966 Neighboring gene contactin 3b Neighboring gene uncharacterized LOC102081945 Neighboring gene contactin-3

Genomic regions, transcripts, and products

Expression

  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

General protein information

Preferred Names
neural cell adhesion molecule L1-like protein
Names
cell adhesion molecule L1 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    32977236..33047670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019358605.2XP_019214150.1  neural cell adhesion molecule L1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A669EME6
  2. XM_025907482.1XP_025763267.1  neural cell adhesion molecule L1-like protein isoform X2

    UniProtKB/TrEMBL
    A0A669EME6
    Related
    ENSONIP00000074044.1, ENSONIT00000053449.1
    Conserved Domains (6) summary
    cd00063
    Location:627717
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:827919
    fn3; Fibronectin type III domain
    pfam13882
    Location:11811264
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441513
    Ig_3; Immunoglobulin domain
    cd00096
    Location:547619
    Ig; Immunoglobulin domain
    cl11960
    Location:140233
    Ig; Immunoglobulin domain
  3. XM_025907483.1XP_025763268.1  neural cell adhesion molecule L1-like protein isoform X3

    UniProtKB/TrEMBL
    A0A669B012
    Related
    ENSONIP00000025528.2, ENSONIT00000025549.2
    Conserved Domains (6) summary
    cd00063
    Location:627717
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:827919
    fn3; Fibronectin type III domain
    pfam13882
    Location:11551238
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441513
    Ig_3; Immunoglobulin domain
    cd00096
    Location:547619
    Ig; Immunoglobulin domain
    cl11960
    Location:140233
    Ig; Immunoglobulin domain
  4. XM_005450140.4XP_005450197.1  neural cell adhesion molecule L1-like protein isoform X4

    UniProtKB/TrEMBL
    A0A669B012, A0A669DPR7
    Related
    ENSONIP00000062819.1, ENSONIT00000045333.1
    Conserved Domains (8) summary
    cd00096
    Location:547619
    Ig; Immunoglobulin domain
    smart00408
    Location:456516
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:446526
    IG_like; Immunoglobulin like
    cd00063
    Location:627717
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:254342
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:827919
    fn3; Fibronectin type III domain
    pfam13882
    Location:11011184
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:140233
    Ig; Immunoglobulin domain
  5. XM_025907484.1XP_025763269.1  neural cell adhesion molecule L1-like protein isoform X5

    UniProtKB/TrEMBL
    A0A669B012
    Conserved Domains (6) summary
    cd00063
    Location:627717
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:827919
    fn3; Fibronectin type III domain
    pfam13882
    Location:10911174
    Bravo_FIGEY; Bravo-like intracellular region
    pfam13927
    Location:441513
    Ig_3; Immunoglobulin domain
    cd00096
    Location:547619
    Ig; Immunoglobulin domain
    cl11960
    Location:140233
    Ig; Immunoglobulin domain
  6. XM_005450142.4XP_005450199.1  neural cell adhesion molecule L1-like protein isoform X6

    UniProtKB/TrEMBL
    A0A669BK21
    Related
    ENSONIP00000034884.1, ENSONIT00000062667.1
    Conserved Domains (8) summary
    cd00096
    Location:547619
    Ig; Immunoglobulin domain
    smart00408
    Location:456516
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:446526
    IG_like; Immunoglobulin like
    cd00063
    Location:627717
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:254342
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:827919
    fn3; Fibronectin type III domain
    pfam13882
    Location:10671150
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:140233
    Ig; Immunoglobulin domain