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abcg8 ATP-binding cassette, sub-family G (WHITE), member 8 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694298, updated on 8-Mar-2024

Summary

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Gene symbol
abcg8
Gene description
ATP-binding cassette, sub-family G (WHITE), member 8
See related
Ensembl:ENSONIG00000000915
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in liver (RPKM 3.2) and whole embryo (RPKM 2.2) See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
13
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG13 NC_031978.2 (11192948..11201759, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG13 NC_031978.1 (4407369..4416150)

Linkage Group LG13 - NC_031978.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102075613 Neighboring gene zinc finger, HIT-type containing 2 Neighboring gene leucine-rich pentatricopeptide repeat containing Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 5 Neighboring gene dynein, cytoplasmic 2, light intermediate chain 1 Neighboring gene LYR motif containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family G member 8
Names
ATP binding cassette subfamily G member 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031978.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    11192948..11201759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019366916.2 → XP_019222461.1  ATP-binding cassette sub-family G member 8 isoform X2

    UniProtKB/TrEMBL
    A0A669B3W5
    Related
    ENSONIP00000029163.1, ENSONIT00000085803.1

  2. XM_005474342.3 → XP_005474399.1  ATP-binding cassette sub-family G member 8 isoform X1

    UniProtKB/TrEMBL
    A0A669B3W5, I3IX17
    Related
    ENSONIP00000001157.1, ENSONIT00000001156.2
    Conserved Domains (3) summary
    cd03234
    Location:57 → 286
    ABCG_White; White pigment protein homolog of ABCG transporter subfamily
    TIGR00955
    Location:52 → 658
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
    pfam01061
    Location:397 → 601
    ABC2_membrane; ABC-2 type transporter
Nucleotide Protein
Heading Accession and Version

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