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usp6nl USP6 N-terminal like [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100693704, updated on 8-Mar-2024

Summary

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Gene symbol
usp6nl
Gene description
USP6 N-terminal like
See related
Ensembl:ENSONIG00000017936
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in heart (RPKM 18.2), eye (RPKM 15.4) and 7 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
18
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (18911226..19006486)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (20515890..20611167)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112842640 Neighboring gene uncharacterized LOC112842641 Neighboring gene cugbp, Elav-like family member 2 Neighboring gene uncharacterized LOC106098457 Neighboring gene uncharacterized LOC112842633

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
USP6 N-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    18911226..19006486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005475846.4 → XP_005475903.1  USP6 N-terminal-like protein isoform X4

    UniProtKB/TrEMBL
    A0A669CXY8, A0A669DGF6
    Related
    ENSONIP00000052292.1, ENSONIT00000035537.1
    Conserved Domains (1) summary
    smart00164
    Location:98 → 313
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. XM_005475845.4 → XP_005475902.1  USP6 N-terminal-like protein isoform X3

    UniProtKB/TrEMBL
    A0A669DGF6
    Related
    ENSONIP00000057450.1, ENSONIT00000038494.1
    Conserved Domains (1) summary
    smart00164
    Location:106 → 321
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  3. XM_003448112.5 → XP_003448160.1  USP6 N-terminal-like protein isoform X1

    UniProtKB/TrEMBL
    A0A669DGF6
    Conserved Domains (1) summary
    smart00164
    Location:120 → 335
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  4. XM_005475844.4 → XP_005475901.1  USP6 N-terminal-like protein isoform X2

    UniProtKB/TrEMBL
    A0A669DGF6, A0A669EAG1
    Related
    ENSONIP00000070040.1, ENSONIT00000057603.1
    Conserved Domains (1) summary
    smart00164
    Location:113 → 328
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein
Heading Accession and Version

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