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itgb5 integrin, beta 5 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100693382, updated on 8-Mar-2024

Summary

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Gene symbol
itgb5
Gene description
integrin, beta 5
See related
Ensembl:ENSONIG00000013667
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in brain (RPKM 18.4), eye (RPKM 10.2) and 7 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16
Exon count:
16
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG16 NC_031987.2 (31823432..31876306, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG16 NC_031987.1 (4143493..4196370)

Linkage Group LG16 - NC_031987.2Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor, alpha-induced protein 6 Neighboring gene uncharacterized LOC102081572 Neighboring gene uncharacterized LOC112844212 Neighboring gene RNA binding motif protein 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-5
Names
integrin subunit beta 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031987.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    31823432..31876306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003456261.5 → XP_003456309.1  integrin beta-5

    UniProtKB/TrEMBL
    A0A669DHA9
    Related
    ENSONIP00000058275.1, ENSONIT00000052435.1
    Conserved Domains (3) summary
    pfam00362
    Location:38 → 467
    Integrin_beta; Integrin, beta chain
    pfam07965
    Location:639 → 722
    Integrin_B_tail; Integrin beta tail domain
    pfam08725
    Location:749 → 785
    Integrin_b_cyt; Integrin beta cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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