U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

prkd2 protein kinase D2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100692192, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
prkd2
Gene description
protein kinase D2
See related
Ensembl:ENSONIG00000006021
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 13.2), eye (RPKM 7.8) and 8 other tissues See more
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG14
Exon count:
19
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG14 NC_031979.2 (21806571..21838199, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG14 NC_031979.1 (671099..702771)

Linkage Group LG14 - NC_031979.2Genomic Context describing neighboring genes Neighboring gene 7 transmembrane receptor domain-containing protein Neighboring gene G protein-coupled receptor 184 Neighboring gene striatin, calmodulin binding protein 4 Neighboring gene fukutin related protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
serine/threonine-protein kinase D2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031979.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    21806571..21838199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005455770.4 → XP_005455827.1  serine/threonine-protein kinase D2 isoform X2

    UniProtKB/TrEMBL
    A0A669BW81, A0A669F0J1
    Related
    ENSONIP00000076662.1, ENSONIT00000049098.1
    Conserved Domains (5) summary
    smart00220
    Location:611 → 863
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd00029
    Location:303 → 352
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd01239
    Location:427 → 567
    PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
    cd14082
    Location:603 → 860
    STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    pfam00130
    Location:175 → 224
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)

  2. XM_005455769.4 → XP_005455826.1  serine/threonine-protein kinase D2 isoform X1

    See identical proteins and their annotated locations for XP_005455826.1

    UniProtKB/TrEMBL
    A0A669BQH9, A0A669BW81
    Conserved Domains (5) summary
    smart00220
    Location:617 → 869
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd00029
    Location:303 → 352
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd01239
    Location:433 → 573
    PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
    cd14082
    Location:609 → 866
    STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    pfam00130
    Location:175 → 224
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)

  3. XM_005455768.4 → XP_005455825.1  serine/threonine-protein kinase D2 isoform X1

    See identical proteins and their annotated locations for XP_005455825.1

    UniProtKB/TrEMBL
    A0A669BQH9, A0A669BW81
    Related
    ENSONIP00000037618.1, ENSONIT00000050887.1
    Conserved Domains (5) summary
    smart00220
    Location:617 → 869
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd00029
    Location:303 → 352
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
    cd01239
    Location:433 → 573
    PH_PKD; Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain
    cd14082
    Location:609 → 866
    STKc_PKD; Catalytic domain of the Serine/Threonine kinase, Protein Kinase D
    pfam00130
    Location:175 → 224
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.