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gas2 growth arrest specific 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691714, updated on 8-Mar-2024

Summary

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Gene symbol
gas2
Gene description
growth arrest specific 2
See related
Ensembl:ENSONIG00000008289
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in brain (RPKM 4.1), whole embryo (RPKM 2.9) and 7 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG7
Exon count:
11
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (50331151..50352231, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (48265919..48287132)

Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene small VCP interacting protein Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene FA complementation group F Neighboring gene solute carrier family 17 member 6a Neighboring gene P2Y purinoceptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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Related articles in PubMed

  1. Growth arrest specific gene 2 in tilapia (Oreochromis niloticus): molecular characterization and functional analysis under low-temperature stress. Yang C, et al. BMC Mol Biol, 2017 Jul 17. PMID 28716034, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal anchor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin crosslink formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
growth arrest-specific protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    50331151..50352231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005450830.4 → XP_005450887.1  growth arrest-specific protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005450887.1

    UniProtKB/TrEMBL
    A0A221SAF6, A0A669CDS5
    Related
    ENSONIP00000046360.1, ENSONIT00000074766.1
    Conserved Domains (2) summary
    pfam02187
    Location:239 → 308
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cl00030
    Location:29 → 173
    CH_SF; calponin homology (CH) domain superfamily

  2. XM_025908479.1 → XP_025764264.1  growth arrest-specific protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A221SAF6, A0A669CDS5
    Conserved Domains (2) summary
    pfam02187
    Location:239 → 308
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cl00030
    Location:29 → 173
    CH_SF; calponin homology (CH) domain superfamily

  3. XM_005450829.4 → XP_005450886.1  growth arrest-specific protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005450886.1

    UniProtKB/TrEMBL
    A0A221SAF6, A0A669CDS5
    Conserved Domains (2) summary
    pfam02187
    Location:239 → 308
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cl00030
    Location:29 → 173
    CH_SF; calponin homology (CH) domain superfamily

  4. XM_005450832.4 → XP_005450889.1  growth arrest-specific protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005450889.1

    UniProtKB/TrEMBL
    A0A221SAF6, I3JNI4
    Related
    ENSONIP00000010428.1, ENSONIT00000010437.2
    Conserved Domains (2) summary
    pfam02187
    Location:232 → 301
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cl00030
    Location:29 → 166
    CH_SF; calponin homology (CH) domain superfamily

  5. XM_005450831.4 → XP_005450888.1  growth arrest-specific protein 2 isoform X2

    See identical proteins and their annotated locations for XP_005450888.1

    UniProtKB/TrEMBL
    A0A221SAF6, I3JNI4
    Conserved Domains (2) summary
    pfam02187
    Location:232 → 301
    GAS2; Growth-Arrest-Specific Protein 2 Domain
    cl00030
    Location:29 → 166
    CH_SF; calponin homology (CH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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