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mkln1 muskelin 1, intracellular mediator containing kelch motifs [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691377, updated on 8-Mar-2024

Summary

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Gene symbol
mkln1
Gene description
muskelin 1, intracellular mediator containing kelch motifs
See related
Ensembl:ENSONIG00000011967
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in blood (RPKM 8.6), testis (RPKM 8.2) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See mkln1 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
18
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG17 NC_031981.2 (37589421..37622920, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG17 NC_031981.1 (38945505..38977670, complement)

Linkage Group LG17 - NC_031981.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109195102 Neighboring gene podocalyxin-like Neighboring gene uncharacterized LOC102075996 Neighboring gene neuroepithelial cell transforming 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
muskelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031981.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    37589421..37622920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003449766.5 → XP_003449814.3  muskelin isoform X2

    UniProtKB/TrEMBL
    A0A669B358
    Related
    ENSONIP00000029889.1, ENSONIT00000055358.1
    Conserved Domains (4) summary
    PLN02153
    Location:301 → 495
    PLN02153; epithiospecifier protein
    sd00038
    Location:265 → 316
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:6 → 201
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:276 → 328
    Kelch_3; Galactose oxidase, central domain

  2. XM_013274158.3 → XP_013129612.1  muskelin isoform X1

    UniProtKB/TrEMBL
    I3K1S2
    Related
    ENSONIP00000015067.1, ENSONIT00000015080.2
    Conserved Domains (4) summary
    PLN02153
    Location:314 → 508
    PLN02153; epithiospecifier protein
    sd00038
    Location:278 → 329
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:6 → 201
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:289 → 341
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version

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