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cluap1 clusterin associated protein 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691014, updated on 8-Mar-2024

Summary

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Gene symbol
cluap1
Gene description
clusterin associated protein 1
See related
Ensembl:ENSONIG00000012599
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in testis (RPKM 28.8), ovary (RPKM 8.4) and 5 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
13
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG15 NC_031980.2 (33025526..33032789)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG15 NC_031980.1 (20110641..20117868)

Linkage Group LG15 - NC_031980.2Genomic Context describing neighboring genes Neighboring gene N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3 pseudogene Neighboring gene Janus kinase 3 (a protein tyrosine kinase, leukocyte) Neighboring gene solute carrier family 5 member 5 Neighboring gene uncharacterized LOC100703724 Neighboring gene coiled-coil domain containing 124

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clusterin-associated protein 1
Names
clusterin-associated protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031980.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    33025526..33032789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003449012.3 → XP_003449060.1  clusterin-associated protein 1

    UniProtKB/TrEMBL
    A0A669BIW9, I3K414
    Related
    ENSONIP00000035466.1, ENSONIT00000046784.1
    Conserved Domains (2) summary
    pfam10234
    Location:19 → 278
    Cluap1; Clusterin-associated protein-1
    cl12013
    Location:177 → 281
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein
Heading Accession and Version

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