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Bsg basigin (Ok blood group) [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100689246, updated on 8-Mar-2024

Summary

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Gene symbol
Bsg
Gene description
basigin (Ok blood group)
Locus tag
I79_009191
See related
Ensembl:ENSCGRG00015007568
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Bsg in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613904.1 (492378..499746)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (100515139..100522495)

NW_003613904.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 34, ubiqiutin conjugating enzyme Neighboring gene granzyme M Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 Neighboring gene RNA polymerase mitochondrial Neighboring gene fibroblast growth factor 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CD147 facilitates HIV-1 infection by interacting with virus-associated cyclophilin A. Pushkarsky T, et al. Proc Natl Acad Sci U S A, 2001 May 22. PMID 11353871, Free PMC Article
  2. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basigin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613904.1 Reference CriGri_1.0 Primary Assembly

    Range
    492378..499746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007643240.3 → XP_007641430.1  basigin

    UniProtKB/TrEMBL
    A0A8C2MH64
    Conserved Domains (2) summary
    smart00410
    Location:140 → 226
    IG_like; Immunoglobulin like
    cl11960
    Location:140 → 220
    Ig; Immunoglobulin domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    100515139..100522495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027419456.2 → XP_027275257.2  basigin

    UniProtKB/TrEMBL
    A0A8C2MH64, A0A9J7G2H7
    Related
    ENSCGRP00015009843.1, ENSCGRT00015012130.2
    Conserved Domains (2) summary
    smart00410
    Location:140 → 226
    IG_like; Immunoglobulin like
    cd00096
    Location:145 → 152
    Ig; Ig strand B [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99PA3.1 GenPept UniProtKB/Swiss-Prot:Q99PA3

Gene LinkOut

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