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DET1 DET1 partner of COP1 E3 ubiquitin ligase [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100665900, updated on 11-Apr-2024

Summary

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Gene symbol
DET1
Gene description
DET1 partner of COP1 E3 ubiquitin ligase
See related
EnsemblRapid:ENSLAFG00000018651
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See DET1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 13 NC_087354.1 (28804103..28861694, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573448.1 (18460888..18505381)

Chromosome 13 - NC_087354.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L46 Neighboring gene mitochondrial ribosomal protein S11 Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene apoptosis enhancing nuclease Neighboring gene interferon stimulated exonuclease gene 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-like ligase-substrate adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cullin-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DET1 homolog
Names
DET1, COP1 ubiquitin ligase partner
de-etiolated homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087354.1 Reference mLoxAfr1.hap2

    Range
    28804103..28861694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010593843.3 → XP_010592145.1  DET1 homolog isoform X1

    See identical proteins and their annotated locations for XP_010592145.1

    UniProtKB/TrEMBL
    G3TL83
    Conserved Domains (1) summary
    pfam09737
    Location:142 → 546
    Det1; De-etiolated protein 1 Det1

  2. XM_064267108.1 → XP_064123178.1  DET1 homolog isoform X1

  3. XM_064267110.1 → XP_064123180.1  DET1 homolog isoform X3

  4. XM_064267109.1 → XP_064123179.1  DET1 homolog isoform X2

    Related
    ENSLAFP00000015634.4, ENSLAFT00000018650.4

  5. XM_064267107.1 → XP_064123177.1  DET1 homolog isoform X1

  6. XM_010593842.3 → XP_010592144.1  DET1 homolog isoform X1

    See identical proteins and their annotated locations for XP_010592144.1

    UniProtKB/TrEMBL
    G3TL83
    Conserved Domains (1) summary
    pfam09737
    Location:142 → 546
    Det1; De-etiolated protein 1 Det1

  7. XM_023553041.2 → XP_023408809.1  DET1 homolog isoform X1

    UniProtKB/TrEMBL
    G3TL83
    Related
    ENSLAFP00000037108.1, ENSLAFT00000038507.1
    Conserved Domains (1) summary
    pfam09737
    Location:142 → 546
    Det1; De-etiolated protein 1 Det1
Nucleotide Protein
Heading Accession and Version

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