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ZNF644 zinc finger protein 644 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100661092, updated on 11-Apr-2024

Summary

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Gene symbol
ZNF644
Gene description
zinc finger protein 644
See related
EnsemblRapid:ENSLAFG00000002148
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 3 NC_087344.1 (146722211..146933472)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573480.1 (11060873..11193584)

Chromosome 3 - NC_087344.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-like protein 4A Neighboring gene helicase for meiosis 1 Neighboring gene tigger transposable element-derived protein 1-like Neighboring gene large ribosomal subunit protein eL19-like Neighboring gene BarH like homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 644

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087344.1 Reference mLoxAfr1.hap2

    Range
    146722211..146933472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064282322.1 → XP_064138392.1  zinc finger protein 644 isoform X1

  2. XM_023558422.2 → XP_023414190.1  zinc finger protein 644 isoform X1

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:521 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:435 → 455
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:471 → 493
    zf-C2H2; Zinc finger, C2H2 type

  3. XM_023558419.2 → XP_023414187.1  zinc finger protein 644 isoform X1

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:521 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:435 → 455
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:471 → 493
    zf-C2H2; Zinc finger, C2H2 type

  4. XM_064282323.1 → XP_064138393.1  zinc finger protein 644 isoform X4

  5. XM_023558424.2 → XP_023414192.1  zinc finger protein 644 isoform X2

    UniProtKB/TrEMBL
    G3SPX7
    Related
    ENSLAFP00000049607.1, ENSLAFT00000064559.1
    Conserved Domains (3) summary
    sd00017
    Location:498 → 518
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:448 → 470
    zf-C2H2; Zinc finger, C2H2 type

  6. XM_064282324.1 → XP_064138394.1  zinc finger protein 644 isoform X4

  7. XM_023558428.2 → XP_023414196.1  zinc finger protein 644 isoform X2

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:498 → 518
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:448 → 470
    zf-C2H2; Zinc finger, C2H2 type

  8. XM_064282325.1 → XP_064138395.1  zinc finger protein 644 isoform X5

    Related
    ENSLAFP00000032831.1, ENSLAFT00000061620.1

  9. XM_023558425.2 → XP_023414193.1  zinc finger protein 644 isoform X2

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:498 → 518
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:448 → 470
    zf-C2H2; Zinc finger, C2H2 type

  10. XM_023558429.2 → XP_023414197.1  zinc finger protein 644 isoform X3

    UniProtKB/TrEMBL
    G3SPX7
    Related
    ENSLAFP00000034100.1, ENSLAFT00000055430.1
    Conserved Domains (3) summary
    sd00017
    Location:521 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:435 → 455
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:471 → 493
    zf-C2H2; Zinc finger, C2H2 type

  11. XM_023558423.2 → XP_023414191.1  zinc finger protein 644 isoform X1

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:521 → 541
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:435 → 455
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:471 → 493
    zf-C2H2; Zinc finger, C2H2 type

  12. XM_023558427.2 → XP_023414195.1  zinc finger protein 644 isoform X2

    UniProtKB/TrEMBL
    G3SPX7
    Conserved Domains (3) summary
    sd00017
    Location:498 → 518
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:448 → 470
    zf-C2H2; Zinc finger, C2H2 type

RNA

  1. XR_010321466.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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