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ROGDI rogdi atypical leucine zipper [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100660999, updated on 11-Apr-2024

Summary

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Gene symbol
ROGDI
Gene description
rogdi atypical leucine zipper
See related
EnsemblRapid:ENSLAFG00000003222
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 12 NC_087353.1 (59034747..59041170, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573473.1 (10271461..10278318)

Chromosome 12 - NC_087353.1Genomic Context describing neighboring genes Neighboring gene septin 12 Neighboring gene small integral membrane protein 22 Neighboring gene glyoxylate reductase 1 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene ubinuclein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of RAVE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein rogdi homolog
Names
rogdi homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087353.1 Reference mLoxAfr1.hap2

    Range
    59034747..59041170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064295552.1 → XP_064151622.1  protein rogdi homolog isoform X5

  2. XM_023557397.2 → XP_023413165.1  protein rogdi homolog isoform X3

    Conserved Domains (1) summary
    pfam10259
    Location:44 → 258
    Rogdi_lz; Rogdi leucine zipper containing protein

  3. XM_023557396.2 → XP_023413164.1  protein rogdi homolog isoform X1

    UniProtKB/TrEMBL
    G3SRY7
    Conserved Domains (1) summary
    pfam10259
    Location:18 → 283
    Rogdi_lz; Rogdi leucine zipper containing protein

  4. XM_003417733.4 → XP_003417781.1  protein rogdi homolog isoform X2

    UniProtKB/TrEMBL
    G3SRY7
    Related
    ENSLAFP00000002679.3, ENSLAFT00000003221.3
    Conserved Domains (1) summary
    pfam10259
    Location:18 → 276
    Rogdi_lz; Rogdi leucine zipper containing protein

  5. XM_064295551.1 → XP_064151621.1  protein rogdi homolog isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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