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SYS1 SYS1 golgi trafficking protein [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100660681, updated on 11-Apr-2024

Summary

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Gene symbol
SYS1
Gene description
SYS1 golgi trafficking protein
See related
EnsemblRapid:ENSLAFG00000034718 EnsemblRapid:ENSLAFG00000041858
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 24 NC_087365.1 (44731773..44773028)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573439.1 (44762159..44804326)

Chromosome 24 - NC_087365.1Genomic Context describing neighboring genes Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene syndecan 4 Neighboring gene TP53 target 5 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class T Neighboring gene WAP four-disulfide core domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to endosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SYS1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087365.1 Reference mLoxAfr1.hap2

    Range
    44731773..44773028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023550285.2 → XP_023406053.1  protein SYS1 homolog isoform X1

    Conserved Domains (2) summary
    pfam04440
    Location:127 → 195
    Dysbindin; Dysbindin (Dystrobrevin binding protein 1)
    pfam09801
    Location:5 → 76
    SYS1; Integral membrane protein S linking to the trans Golgi network

  2. XM_010591726.3 → XP_010590028.1  protein SYS1 homolog isoform X8

    See identical proteins and their annotated locations for XP_010590028.1

    Conserved Domains (1) summary
    pfam09801
    Location:5 → 76
    SYS1; Integral membrane protein S linking to the trans Golgi network

  3. XM_023550288.2 → XP_023406056.1  protein SYS1 homolog isoform X7

    Conserved Domains (1) summary
    pfam09801
    Location:5 → 76
    SYS1; Integral membrane protein S linking to the trans Golgi network

  4. XM_023550287.2 → XP_023406055.1  protein SYS1 homolog isoform X6

    Conserved Domains (1) summary
    pfam09801
    Location:5 → 92
    SYS1; Integral membrane protein S linking to the trans Golgi network

  5. XM_010591725.3 → XP_010590027.2  protein SYS1 homolog isoform X5

    Conserved Domains (1) summary
    pfam09801
    Location:5 → 76
    SYS1; Integral membrane protein S linking to the trans Golgi network

  6. XM_003411734.4 → XP_003411782.1  protein SYS1 homolog isoform X4

    See identical proteins and their annotated locations for XP_003411782.1

    UniProtKB/TrEMBL
    G3T1A6
    Related
    ENSLAFP00000044000.1, ENSLAFT00000043441.1
    Conserved Domains (1) summary
    pfam09801
    Location:5 → 148
    SYS1; Integral membrane protein S linking to the trans Golgi network

  7. XM_023550286.2 → XP_023406054.1  protein SYS1 homolog isoform X3

    UniProtKB/TrEMBL
    G3T1B2
    Conserved Domains (1) summary
    pfam04440
    Location:12 → 80
    Dysbindin; Dysbindin (Dystrobrevin binding protein 1)

  8. XM_010591723.3 → XP_010590025.1  protein SYS1 homolog isoform X3

    See identical proteins and their annotated locations for XP_010590025.1

    UniProtKB/TrEMBL
    G3T1B2
    Conserved Domains (1) summary
    pfam04440
    Location:12 → 80
    Dysbindin; Dysbindin (Dystrobrevin binding protein 1)

  9. XM_010591721.3 → XP_010590023.1  protein SYS1 homolog isoform X3

    See identical proteins and their annotated locations for XP_010590023.1

    UniProtKB/TrEMBL
    G3T1B2
    Conserved Domains (1) summary
    pfam04440
    Location:12 → 80
    Dysbindin; Dysbindin (Dystrobrevin binding protein 1)

  10. XM_010591720.3 → XP_010590022.1  protein SYS1 homolog isoform X2

    Related
    ENSLAFP00000040777.1, ENSLAFT00000062731.1
    Conserved Domains (1) summary
    pfam04440
    Location:89 → 157
    Dysbindin; Dysbindin (Dystrobrevin binding protein 1)

RNA

  1. XR_002786215.2 RNA Sequence

  2. XR_775763.3 RNA Sequence

Nucleotide Protein
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