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LRBA LPS-responsive vesicle trafficking, beach and anchor containing [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100659848, updated on 12-May-2015
Gene symbol
LRBA
Gene description
LPS-responsive vesicle trafficking, beach and anchor containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
Location:
chromosome: Un
Exon count:
57
Annotation release Status Assembly Chr Location
101 current Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573471.1 (5719241..6482538)

NW_003573471.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing 19 Neighboring gene ribosomal protein S3A Neighboring gene mab-21-like 2 (C. elegans) Neighboring gene doublecortin-like kinase 2 Neighboring gene 40S ribosomal protein S24-like

Genomic Sequence:
NW_003573471.1 Unplaced Scaffold Reference Loxafr3.0 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Names
LPS-responsive vesicle trafficking, beach and anchor containing

RefSeqs of Annotated Genomes: Loxodonta africana Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Loxafr3.0 Primary Assembly

Genomic

  1. NW_003573471.1 Reference Loxafr3.0 Primary Assembly

    Range
    5719241..6482538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010597205.1XP_010595507.1  

    Conserved Domains (7) summary
    cd06071
    Location:22112488
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...
    COG2319
    Location:25912856
    COG2319; FOG: WD40 repeat [General function prediction only]
    pfam06469
    Location:18902058
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam08385
    Location:55149
    DHC_N1; Dynein heavy chain, N-terminal region 1
    pfam13385
    Location:230377
    Laminin_G_3; Concanavalin A-like lectin/glucanases superfamily
    cl02567
    Location:26042844
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cd01201
    Location:20762179
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
  2. XM_010597204.1XP_010595506.1  

    Conserved Domains (3) summary
    cd06071
    Location:56333
    Beach; BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor ...
    COG2319
    Location:436701
    COG2319; FOG: WD40 repeat [General function prediction only]
    cl02567
    Location:449689
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...