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HMGB2 high mobility group box 2 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100655097, updated on 11-Apr-2024

Summary

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Gene symbol
HMGB2
Gene description
high mobility group box 2
See related
EnsemblRapid:ENSLAFG00000010417
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 21 NC_087362.1 (13996911..14008709)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573457.1 (9370163..9373827, complement)

Chromosome 21 - NC_087362.1Genomic Context describing neighboring genes Neighboring gene heart and neural crest derivatives expressed 2 Neighboring gene Sin3A associated protein 30 Neighboring gene stimulator of chondrogenesis 1 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 7 Neighboring gene U6 spliceosomal RNA Neighboring gene polypeptide N-acetylgalactosaminyltransferase like 6 Neighboring gene transcription factor BTF3 homolog 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087362.1 Reference mLoxAfr1.hap2

    Range
    13996911..14008709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003415813.4 → XP_003415861.1  high mobility group protein B2

    See identical proteins and their annotated locations for XP_003415861.1

    UniProtKB/TrEMBL
    G3T5K4, G3TY50
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain

  2. XM_064273575.1 → XP_064129645.1  high mobility group protein B2

    Related
    ENSLAFP00000008719.3, ENSLAFT00000010413.4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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