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MYBPC3 myosin binding protein C3 [ Sus scrofa (pig) ]

Gene ID: 100628050, updated on 8-Mar-2024

Summary

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Official Symbol
MYBPC3provided by VGNC
Official Full Name
myosin binding protein C3provided by VGNC
Primary source
VGNC:VGNC:90501
See related
Ensembl:ENSSSCG00000013236
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Restricted expression toward heart (RPKM 779.4) See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
34
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (15247679..15269714)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (16454543..16476408)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 13 Neighboring gene Spi-1 proto-oncogene Neighboring gene MAP kinase activating death domain Neighboring gene nuclear receptor subfamily 1 group H member 3 Neighboring gene acid phosphatase 2, lysosomal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin-binding protein C, cardiac-type
Names
myosin binding protein C, cardiac

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    15247679..15269714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021085215.1 → XP_020940874.1  myosin-binding protein C, cardiac-type isoform X1

    UniProtKB/TrEMBL
    A0A8D0S2S8
    Conserved Domains (5) summary
    cd05894
    Location:666 → 780
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    cd00063
    Location:784 → 874
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1193 → 1282
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:1002 → 1074
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:466 → 551
    I-set; Immunoglobulin I-set domain

  2. XM_021085219.1 → XP_020940878.1  myosin-binding protein C, cardiac-type isoform X5

    UniProtKB/TrEMBL
    A0A8D0S2S8
    Related
    ENSSSCP00000064197.2, ENSSSCT00000074661.2
    Conserved Domains (6) summary
    cd05894
    Location:666 → 780
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00409
    Location:159 → 254
    IG; Immunoglobulin
    cd00063
    Location:784 → 874
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1193 → 1282
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:1002 → 1074
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:466 → 551
    I-set; Immunoglobulin I-set domain

  3. XM_021085216.1 → XP_020940875.1  myosin-binding protein C, cardiac-type isoform X2

    UniProtKB/TrEMBL
    A0A8D0S2S8
    Conserved Domains (5) summary
    cd05894
    Location:665 → 779
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    cd00063
    Location:783 → 873
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1192 → 1281
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:1001 → 1073
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:465 → 550
    I-set; Immunoglobulin I-set domain

  4. XM_021085217.1 → XP_020940876.1  myosin-binding protein C, cardiac-type isoform X3

    UniProtKB/TrEMBL
    A0A8D0S2S8
    Conserved Domains (5) summary
    cd05894
    Location:653 → 767
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    cd00063
    Location:771 → 861
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1180 → 1269
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:989 → 1061
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:453 → 538
    I-set; Immunoglobulin I-set domain

  5. XM_021085218.1 → XP_020940877.1  myosin-binding protein C, cardiac-type isoform X4

    UniProtKB/TrEMBL
    A0A8D0S2S8
    Related
    ENSSSCP00000014064.4, ENSSSCT00000014456.5
    Conserved Domains (5) summary
    cd05894
    Location:652 → 766
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    cd00063
    Location:770 → 860
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1179 → 1268
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:988 → 1060
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:452 → 537
    I-set; Immunoglobulin I-set domain

  6. XM_021085220.1 → XP_020940879.1  myosin-binding protein C, cardiac-type isoform X6

    UniProtKB/TrEMBL
    A0A8D1KMT8
    Conserved Domains (5) summary
    cd05894
    Location:577 → 691
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    cd00063
    Location:695 → 785
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:1104 → 1193
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:913 → 985
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:377 → 462
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
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