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LMNTD1 lamin tail domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100627442, updated on 8-Mar-2024

Summary

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Official Symbol
LMNTD1provided by VGNC
Official Full Name
lamin tail domain containing 1provided by VGNC
Primary source
VGNC:VGNC:89762
See related
Ensembl:ENSSSCG00000027144
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
IFLTD1
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (47842173..48399901)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (51786081..51974712)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106509230 Neighboring gene basic helix-loop-helix family member e41 Neighboring gene Ras association domain family member 8 Neighboring gene KRAS proto-oncogene, GTPase Neighboring gene electron transfer flavoprotein regulatory factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lamin tail domain-containing protein 1
Names
intermediate filament tail domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    47842173..48399901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021092168.1 → XP_020947827.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  2. XM_021092171.1 → XP_020947830.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  3. XM_021092169.1 → XP_020947828.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  4. XM_021092173.1 → XP_020947832.1  lamin tail domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VDE8
    Conserved Domains (1) summary
    pfam00932
    Location:236 → 344
    LTD; Lamin Tail Domain

  5. XM_021092167.1 → XP_020947826.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Related
    ENSSSCP00000031584.1, ENSSSCT00000040126.3
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  6. XM_021092174.1 → XP_020947833.1  lamin tail domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A287BIL2, A0A4X1VDE3, A0A8D0SXU5
    Related
    ENSSSCP00000055904.1, ENSSSCT00000045123.3
    Conserved Domains (1) summary
    pfam00932
    Location:225 → 333
    LTD; Lamin Tail Domain

  7. XM_021092176.1 → XP_020947835.1  lamin tail domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1VHH0, A0A8D1VGQ4, A0A8D1XKT9
    Conserved Domains (1) summary
    pfam00932
    Location:175 → 283
    LTD; Lamin Tail Domain

  8. XM_021092181.1 → XP_020947840.1  lamin tail domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:81 → 189
    LTD; Lamin Tail Domain

  9. XM_021092180.1 → XP_020947839.1  lamin tail domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:128 → 236
    LTD; Lamin Tail Domain

  10. XM_021092172.1 → XP_020947831.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  11. XM_021092170.1 → XP_020947829.1  lamin tail domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A286ZJD2, A0A4X1VHE2
    Conserved Domains (1) summary
    pfam00932
    Location:254 → 362
    LTD; Lamin Tail Domain

  12. XM_021092179.1 → XP_020947838.1  lamin tail domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1VHH0, A0A8D1VGQ4, A0A8D1XKT9
    Conserved Domains (1) summary
    pfam00932
    Location:175 → 283
    LTD; Lamin Tail Domain

  13. XM_021092183.1 → XP_020947842.1  lamin tail domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:81 → 189
    LTD; Lamin Tail Domain

  14. XM_021092178.1 → XP_020947837.1  lamin tail domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A4X1VHH0, A0A8D1VGQ4, A0A8D1XKT9
    Conserved Domains (1) summary
    pfam00932
    Location:175 → 283
    LTD; Lamin Tail Domain

  15. XM_021092182.1 → XP_020947841.1  lamin tail domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:81 → 189
    LTD; Lamin Tail Domain

  16. XM_021092175.1 → XP_020947834.1  lamin tail domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1VHH0, A0A8D1VGQ4
    Conserved Domains (1) summary
    pfam00932
    Location:194 → 302
    LTD; Lamin Tail Domain

  17. XM_021092184.1 → XP_020947843.1  lamin tail domain-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:81 → 189
    LTD; Lamin Tail Domain

  18. XM_021092185.1 → XP_020947844.1  lamin tail domain-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A4X1VIG8
    Conserved Domains (1) summary
    pfam00932
    Location:75 → 183
    LTD; Lamin Tail Domain

RNA

  1. XR_002344073.1 RNA Sequence

  2. XR_002344070.1 RNA Sequence

  3. XR_002344072.1 RNA Sequence

Nucleotide Protein
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