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NRBP1 nuclear receptor binding protein 1 [ Sus scrofa (pig) ]

Gene ID: 100625594, updated on 8-Mar-2024

Summary

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Official Symbol
NRBP1provided by VGNC
Official Full Name
nuclear receptor binding protein 1provided by VGNC
Primary source
VGNC:VGNC:90891
See related
Ensembl:ENSSSCG00000022454
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 80.0), subcutaneous adipose (RPKM 35.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (111720377..111733032, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (118741368..118762440)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 172 Neighboring gene keratinocyte associated protein 3 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1G Neighboring gene zinc finger protein 513

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244239.1 → NP_001231168.1  nuclear receptor-binding protein

    See identical proteins and their annotated locations for NP_001231168.1

    Status: PROVISIONAL

    Source sequence(s)
    AK235798
    UniProtKB/TrEMBL
    A0A286ZTN0, A0A481B6D8, A0A8D0TCT0
    Related
    ENSSSCP00000031242.3, ENSSSCT00000054460.3
    Conserved Domains (2) summary
    smart00220
    Location:83 → 325
    S_TKc; Serine/Threonine protein kinases, catalytic domain
    cd14034
    Location:60 → 334
    PK_NRBP1; Pseudokinase domain of Nuclear Receptor Binding Protein 1

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    111720377..111733032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021085722.1 → XP_020941381.1  nuclear receptor-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A286ZTN0
    Conserved Domains (1) summary
    cd14034
    Location:60 → 334
    PK_NRBP1; Pseudokinase domain of Nuclear Receptor Binding Protein 1
Nucleotide Protein
Heading Accession and Version

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