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RIOK3 RIO kinase 3 [ Sus scrofa (pig) ]

Gene ID: 100621912, updated on 8-Mar-2024

Summary

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Official Symbol
RIOK3provided by VGNC
Official Full Name
RIO kinase 3provided by VGNC
Primary source
VGNC:VGNC:92316
See related
Ensembl:ENSSSCG00000029518
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 36.8), spleen (RPKM 34.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RIOK3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (108338986..108363872)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (100883279..100896844)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene RB binding protein 8, endonuclease Neighboring gene uncharacterized LOC106510679 Neighboring gene Cdk5 and Abl enzyme substrate 1 Neighboring gene transmembrane protein 241 Neighboring gene regulator of MON1-CCZ1 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene ankyrin repeat domain 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein kinase RIO3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    108338986..108363872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096177.1 → XP_020951836.1  serine/threonine-protein kinase RIO3 isoform X1

    UniProtKB/TrEMBL
    A0A0B8RZ74, A0A287B383, A0A480YXT7, A0A4X1VI84, A0A8D0S1D2, A0A8D1C0L4
    Related
    ENSSSCP00000050554.2, ENSSSCT00000042310.3
    Conserved Domains (1) summary
    cd05146
    Location:253 → 453
    RIO3_euk; Catalytic domain of the atypical protein serine kinase, RIO3 kinase

  2. XM_021096178.1 → XP_020951837.1  serine/threonine-protein kinase RIO3 isoform X2

    UniProtKB/TrEMBL
    A0A480YXT7, A0A8D0S1D2
    Conserved Domains (1) summary
    cl21453
    Location:253 → 395
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein Strain
Heading Accession and Version

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