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SOX1 SRY-box transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 100615508, updated on 29-Mar-2024

Summary

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Official Symbol
SOX1provided by VGNC
Official Full Name
SRY-box transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:57491
Locus tag
CK820_G0036381
See related
Ensembl:ENSPTRG00000040942
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 14 NC_072412.2 (117702323..117706289)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 13 NC_072411.1 (113044079..113048054)

Chromosome 14 - NC_072412.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134808165 Neighboring gene uncharacterized LOC107967993 Neighboring gene small nucleolar RNA SNORD44 Neighboring gene uncharacterized LOC134808249 Neighboring gene S-antigen protein-like Neighboring gene uncharacterized LOC134808167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-1
Names
SRY (sex determining region Y)-box 1
SRY-box 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072412.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    117702323..117706289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016925566.3 → XP_016781055.2  transcription factor SOX-1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
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