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EPHB3 EPH receptor B3 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100607880, updated on 11-Apr-2024

Summary

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Gene symbol
EPHB3
Gene description
EPH receptor B3
See related
EnsemblRapid:ENSNLEG00000006254
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 11 NC_044391.1 (105708445..105728990)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 11 NC_019826.1 (109432155..109450981)

Chromosome 11 - NC_044391.1Genomic Context describing neighboring genes Neighboring gene chordin Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene uncharacterized LOC115837309 Neighboring gene MAGE family member F1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin type-B receptor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044391.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    105708445..105728990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030822938.1 → XP_030678798.1  ephrin type-B receptor 3 isoform X2

    UniProtKB/TrEMBL
    G1R347
    Related
    ENSNLEP00000007619.3, ENSNLET00000007988.3
    Conserved Domains (7) summary
    cd05065
    Location:628 → 896
    PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
    cd10478
    Location:39 → 211
    EphR_LBD_B3; Ligand Binding Domain of Ephrin type-B Receptor 3
    cd00063
    Location:473 → 542
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07699
    Location:284 → 316
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam00041
    Location:341 → 436
    fn3; Fibronectin type III domain
    pfam14575
    Location:581 → 628
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:922 → 990
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_030822937.1 → XP_030678797.1  ephrin type-B receptor 3 isoform X1

    UniProtKB/TrEMBL
    G1R347
    Related
    ENSNLEP00000007624.3, ENSNLET00000007993.3
    Conserved Domains (8) summary
    cd05065
    Location:628 → 933
    PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
    cd10478
    Location:39 → 211
    EphR_LBD_B3; Ligand Binding Domain of Ephrin type-B Receptor 3
    cd00063
    Location:473 → 542
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07699
    Location:284 → 316
    Ephrin_rec_like; Putative ephrin-receptor like
    pfam00041
    Location:341 → 436
    fn3; Fibronectin type III domain
    pfam14575
    Location:581 → 628
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl15755
    Location:959 → 1027
    SAM_superfamily; SAM (Sterile alpha motif )
    cl22855
    Location:270 → 337
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
Heading Accession and Version

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