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TCF12 transcription factor 12 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100603993, updated on 3-Apr-2024

Summary

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Gene symbol
TCF12
Gene description
transcription factor 12
See related
EnsemblRapid:ENSNLEG00000006707
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
24
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 6 NC_044386.1 (43995299..44375962, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 6 NC_019821.1 (43025897..43412994, complement)

Chromosome 6 - NC_044386.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-like Neighboring gene uncharacterized LOC115835384 Neighboring gene small nucleolar RNA U13 Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene acyl-CoA-binding domain-containing protein 7-like Neighboring gene zinc finger protein 280D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044386.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    43995299..44375962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003266967.4 → XP_003267015.1  transcription factor 12 isoform X3

    See identical proteins and their annotated locations for XP_003267015.1

    UniProtKB/TrEMBL
    A0A2I3H293
    Conserved Domains (1) summary
    cd18945
    Location:571 → 655
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  2. XM_030814043.1 → XP_030669903.1  transcription factor 12 isoform X2

    UniProtKB/TrEMBL
    G1R4S1
    Conserved Domains (1) summary
    cd18945
    Location:594 → 678
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  3. XM_003266968.4 → XP_003267016.1  transcription factor 12 isoform X1

    See identical proteins and their annotated locations for XP_003267016.1

    UniProtKB/TrEMBL
    A0A2I3GKC1, G1R4S1
    Conserved Domains (1) summary
    cd18945
    Location:595 → 679
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  4. XM_030814045.1 → XP_030669905.1  transcription factor 12 isoform X5

    UniProtKB/TrEMBL
    A0A2I3H293

  5. XM_030814044.1 → XP_030669904.1  transcription factor 12 isoform X4

    UniProtKB/TrEMBL
    G1R4S1
    Conserved Domains (1) summary
    cd18945
    Location:537 → 621
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  6. XM_030814047.1 → XP_030669907.1  transcription factor 12 isoform X8

  7. XM_003266969.4 → XP_003267017.1  transcription factor 12 isoform X7

    Related
    ENSNLEP00000045181.2, ENSNLET00000057419.2
    Conserved Domains (1) summary
    cd18945
    Location:401 → 485
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins

  8. XM_012507400.2 → XP_012362854.1  transcription factor 12 isoform X6

    UniProtKB/TrEMBL
    A0A2I3HCX3
    Related
    ENSNLEP00000031707.2, ENSNLET00000056340.2
    Conserved Domains (2) summary
    pfam10428
    Location:106 → 241
    SOG2; RAM signalling pathway protein
    cd18945
    Location:425 → 509
    bHLH_E-protein_TCF4_E2-2; basic helix-loop-helix (bHLH) domain found in transcription factor 4 (TCF-4) and similar proteins
Nucleotide Protein
Heading Accession and Version

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