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IKZF1 IKAROS family zinc finger 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100601106, updated on 8-Mar-2024

Summary

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Gene symbol
IKZF1
Gene description
IKAROS family zinc finger 1
See related
EnsemblRapid:ENSNLEG00000008219
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 17 NC_044397.1 (55225541..55325237, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 17 NC_019832.1 (58438370..58536783, complement)

Chromosome 17 - NC_044397.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene fidgetin like 1 Neighboring gene sperm microtubule inner protein 7 Neighboring gene zona pellucida binding protein Neighboring gene nucleolar GTP-binding protein 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein Ikaros

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044397.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    55225541..55325237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030796426.1 → XP_030652286.1  DNA-binding protein Ikaros isoform X3

    Related
    ENSNLEP00000044359.2, ENSNLET00000046431.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  2. XM_030796424.1 → XP_030652284.1  DNA-binding protein Ikaros isoform X2

    Related
    ENSNLEP00000026848.2, ENSNLET00000046551.2
    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  3. XM_030796425.1 → XP_030652285.1  DNA-binding protein Ikaros isoform X3

    Conserved Domains (2) summary
    sd00017
    Location:119 → 139
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:132 → 156
    zf-H2C2_2; Zinc-finger double domain

  4. XM_003275023.4 → XP_003275071.2  DNA-binding protein Ikaros isoform X4

    See identical proteins and their annotated locations for XP_003275071.2

    UniProtKB/TrEMBL
    G1R9W5
    Related
    ENSNLEP00000045514.2, ENSNLET00000057707.2
    Conserved Domains (2) summary
    COG5048
    Location:1 → 131
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:60 → 80
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_030796423.1 → XP_030652283.1  DNA-binding protein Ikaros isoform X1

    Related
    ENSNLEP00000057310.1, ENSNLET00000069871.1
    Conserved Domains (2) summary
    sd00017
    Location:139 → 159
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:152 → 176
    zf-H2C2_2; Zinc-finger double domain

  6. XM_012496957.2 → XP_012352411.1  DNA-binding protein Ikaros isoform X5

    See identical proteins and their annotated locations for XP_012352411.1

  7. XM_012496956.2 → XP_012352410.1  DNA-binding protein Ikaros isoform X5

    See identical proteins and their annotated locations for XP_012352410.1

Nucleotide Protein
Heading Accession and Version

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