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SPATA6 spermatogenesis associated 6 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100581220, updated on 8-Mar-2024

Summary

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Gene symbol
SPATA6
Gene description
spermatogenesis associated 6
See related
EnsemblRapid:ENSNLEG00000016340
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SPATA6 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 12 NC_044392.1 (16837737..16971169, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 12 NC_019827.1 (17225235..17359383, complement)

Chromosome 12 - NC_044392.1Genomic Context describing neighboring genes Neighboring gene putative selection and upkeep of intraepithelial T-cells protein 1 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 5 member 9 Neighboring gene U4 spliceosomal RNA Neighboring gene AGBL carboxypeptidase 4 Neighboring gene BEN domain containing 5 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables myosin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in sperm connecting piece IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044392.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    16837737..16971169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003259006.4 → XP_003259054.3  spermatogenesis-associated protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A2I3HHF1
    Related
    ENSNLEP00000042891.2, ENSNLET00000053207.2
    Conserved Domains (1) summary
    pfam14909
    Location:11 → 135
    SPATA6; Spermatogenesis-assoc protein 6

  2. XM_012511002.2 → XP_012366456.2  spermatogenesis-associated protein 6 isoform X2

    UniProtKB/TrEMBL
    G1S2T9
    Conserved Domains (1) summary
    pfam14909
    Location:11 → 149
    SPATA6; Spermatogenesis-assoc protein 6

  3. XM_030823877.1 → XP_030679737.1  spermatogenesis-associated protein 6 isoform X5

    UniProtKB/TrEMBL
    G1S2T9

  4. XM_030823875.1 → XP_030679735.1  spermatogenesis-associated protein 6 isoform X1

    UniProtKB/TrEMBL
    G1S2T9
    Related
    ENSNLEP00000019827.2, ENSNLET00000020824.3
    Conserved Domains (1) summary
    pfam14909
    Location:11 → 149
    SPATA6; Spermatogenesis-assoc protein 6

  5. XM_030823876.1 → XP_030679736.1  spermatogenesis-associated protein 6 isoform X3

    UniProtKB/TrEMBL
    A0A2I3HHF1
    Conserved Domains (1) summary
    pfam14909
    Location:11 → 135
    SPATA6; Spermatogenesis-assoc protein 6

  6. XM_030823878.1 → XP_030679738.1  spermatogenesis-associated protein 6 isoform X6

    UniProtKB/TrEMBL
    G1S2T9
    Conserved Domains (1) summary
    pfam14909
    Location:11 → 149
    SPATA6; Spermatogenesis-assoc protein 6
Nucleotide Protein
Heading Accession and Version

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