U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

atf1 activating transcription factor 1 [ Anolis carolinensis (green anole) ]

Gene ID: 100558002, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
atf1
Gene description
activating transcription factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 2 NC_085842.1 (160298739..160322505)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 2 NC_014777.1 (91109927..91132886, complement)

Chromosome 2 - NC_085842.1Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 4 Neighboring gene disco interacting protein 2 homolog B Neighboring gene uncharacterized LOC103277764 Neighboring gene transmembrane protease serine 12 Neighboring gene transmembrane protease serine 12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ATF4-CREB1 transcription factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cyclic AMP-dependent transcription factor ATF-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085842.1 Reference rAnoCar3.1.pri

    Range
    160298739..160322505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008103962.3 → XP_008102169.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    Conserved Domains (2) summary
    cd14690
    Location:202 → 256
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:101 → 132
    pKID; pKID domain

  2. XM_003216927.4 → XP_003216975.2  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    Conserved Domains (2) summary
    cd14690
    Location:257 → 311
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:101 → 132
    pKID; pKID domain

  3. XM_008103960.2 → XP_008102167.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    See identical proteins and their annotated locations for XP_008102167.1

    Conserved Domains (2) summary
    cd14690
    Location:221 → 275
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:65 → 96
    pKID; pKID domain

  4. XM_008103961.3 → XP_008102168.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    See identical proteins and their annotated locations for XP_008102168.1

    Conserved Domains (2) summary
    cd14690
    Location:221 → 275
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:65 → 96
    pKID; pKID domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.