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katna1 katanin catalytic subunit A1 [ Anolis carolinensis (green anole) ]

Gene ID: 100553196, updated on 8-Mar-2024

Summary

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Gene symbol
katna1
Gene description
katanin catalytic subunit A1
See related
Ensembl:ENSACAG00000006866
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See katna1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 1 NC_085841.1 (77028298..77047731)
102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338806.1 (246439..265887, complement)

Chromosome 1 - NC_085841.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 43 Neighboring gene large tumor suppressor kinase 1 Neighboring gene uncharacterized LOC134298074 Neighboring gene glycosylated integral membrane protein 1 Neighboring gene peptidylprolyl isomerase like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule severing ATPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule severing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
katanin p60 ATPase-containing subunit A1
Names
katanin p60 (ATPase containing) subunit A 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085841.1 Reference rAnoCar3.1.pri

    Range
    77028298..77047731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003224692.4 → XP_003224740.1  katanin p60 ATPase-containing subunit A1

    See identical proteins and their annotated locations for XP_003224740.1

    UniProtKB/TrEMBL
    H9GC22
    Related
    ENSACAP00000006756.2
    Conserved Domains (3) summary
    smart00382
    Location:245 → 386
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:249 → 385
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:455 → 493
    Vps4_C; Vps4 C terminal oligomerization domain

  2. XM_008116668.3 → XP_008114875.1  katanin p60 ATPase-containing subunit A1

    See identical proteins and their annotated locations for XP_008114875.1

    UniProtKB/TrEMBL
    H9GC22
    Conserved Domains (3) summary
    smart00382
    Location:245 → 386
    AAA; ATPases associated with a variety of cellular activities
    pfam00004
    Location:249 → 385
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam09336
    Location:455 → 493
    Vps4_C; Vps4 C terminal oligomerization domain
Nucleotide Protein
Heading Accession and Version

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