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PRDM10 PR/SET domain 10 [ Meleagris gallopavo (turkey) ]

Gene ID: 100547040, updated on 8-Mar-2024

Summary

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Gene symbol
PRDM10
Gene description
PR/SET domain 10
See related
Ensembl:ENSMGAG00000001112
Gene type
protein coding
RefSeq status
MODEL
Organism
Meleagris gallopavo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Meleagridinae; Meleagris
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
23
Annotation release Status Assembly Chr Location
103 current Turkey_5.1 (GCF_000146605.3) 26 NC_015036.2 (1543434..1582121)
Build 1.1 previous assembly Turkey_2.01 (GCF_000146605.1) 26 NC_015036.1 (1569277..1596554)

Chromosome 26 - NC_015036.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109370994 Neighboring gene amyloid beta precursor like protein 2 Neighboring gene nuclear factor related to kappaB binding protein Neighboring gene ST14 transmembrane serine protease matriptase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Meleagris gallopavo Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Turkey_5.1 Primary Assembly

Genomic

  1. NC_015036.2 Reference Turkey_5.1 Primary Assembly

    Range
    1543434..1582121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031556861.1 → XP_031412721.1  PR domain zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A803XUQ4, G1MQX7
    Conserved Domains (7) summary
    COG5048
    Location:643 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:439 → 539
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:207 → 234
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:237 → 368
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  2. XM_010723602.3 → XP_010721904.1  PR domain zinc finger protein 10 isoform X2

    UniProtKB/TrEMBL
    G1MQX7
    Conserved Domains (7) summary
    COG5048
    Location:629 → 693
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:629 → 649
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:655 → 677
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:585 → 610
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:425 → 525
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:193 → 220
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:223 → 354
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  3. XM_010723600.3 → XP_010721902.1  PR domain zinc finger protein 10 isoform X1

    See identical proteins and their annotated locations for XP_010721902.1

    UniProtKB/TrEMBL
    A0A803XUQ4, G1MQX7
    Conserved Domains (7) summary
    COG5048
    Location:643 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:439 → 539
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:207 → 234
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:237 → 368
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  4. XM_010723601.3 → XP_010721903.1  PR domain zinc finger protein 10 isoform X1

    See identical proteins and their annotated locations for XP_010721903.1

    UniProtKB/TrEMBL
    A0A803XUQ4, G1MQX7
    Conserved Domains (7) summary
    COG5048
    Location:643 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:439 → 539
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:207 → 234
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:237 → 368
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  5. XM_019622963.2 → XP_019478508.1  PR domain zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A803XUQ4, G1MQX7
    Related
    ENSMGAP00000023250.1, ENSMGAT00000021095.1
    Conserved Domains (7) summary
    COG5048
    Location:643 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:439 → 539
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:207 → 234
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:237 → 368
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  6. XM_010723603.3 → XP_010721905.1  PR domain zinc finger protein 10 isoform X3

    UniProtKB/TrEMBL
    A0A803XV35, G1MQX7
    Related
    ENSMGAP00000023381.1, ENSMGAT00000031215.1
    Conserved Domains (7) summary
    COG5048
    Location:603 → 667
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:603 → 623
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:629 → 651
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:559 → 584
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:399 → 499
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:167 → 194
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:197 → 328
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins

  7. XM_019622962.2 → XP_019478507.1  PR domain zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A803XUQ4, G1MQX7
    Conserved Domains (7) summary
    COG5048
    Location:643 → 707
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:643 → 663
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:669 → 691
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:599 → 624
    zf-H2C2_2; Zinc-finger double domain
    pfam16638
    Location:439 → 539
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
    pfam18445
    Location:207 → 234
    zf_PR_Knuckle; PR zinc knuckle motif
    cd19194
    Location:237 → 368
    PR-SET_PRDM10; PR-SET domain found in PR domain zinc finger protein 10 (PRDM10) and similar proteins
Nucleotide Protein
Heading Accession and Version

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