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trnau1apb tRNA selenocysteine 1 associated protein 1b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100529040, updated on 8-Mar-2024

Summary

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Gene symbol
trnau1apb
Gene description
tRNA selenocysteine 1 associated protein 1b
See related
Ensembl:ENSIPUG00000008843
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tsp1l
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 20 NC_030435.2 (7677193..7686122)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 20 NC_030435.1 (7438833..7447763)

Chromosome 20 - NC_030435.2Genomic Context describing neighboring genes Neighboring gene derriere protein Neighboring gene cofactor required for Sp1 transcriptional activation, subunit 7 Neighboring gene chromodomain protein, Y-like Neighboring gene ribonuclease P/MRP 40 subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  3. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA selenocysteine 1-associated protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201310.1 → NP_001188239.1  tRNA selenocysteine 1-associated protein 1-like

    See identical proteins and their annotated locations for NP_001188239.1

    Status: PROVISIONAL

    Source sequence(s)
    GU589501
    UniProtKB/TrEMBL
    E3TGL5
    Related
    ENSIPUP00000013049.1, ENSIPUT00000013592.1
    Conserved Domains (2) summary
    cd12610
    Location:7 → 90
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:98 → 179
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030435.2 Reference Coco_2.0 Primary Assembly

    Range
    7677193..7686122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases