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clic3 chloride intracellular channel 3 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528919, updated on 8-Mar-2024

Summary

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Gene symbol
clic3
Gene description
chloride intracellular channel 3
See related
Ensembl:ENSIPUG00000008742
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
clic4
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 18 NC_030433.2 (3193948..3200368, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 18 NC_030433.1 (3171913..3178333, complement)

Chromosome 18 - NC_030433.2Genomic Context describing neighboring genes Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor a Neighboring gene patatin-like phospholipase domain containing 7a Neighboring gene fucosyltransferase 7 (alpha (1,3) fucosyltransferase) Neighboring gene POU domain, class 5, transcription factor 3 Neighboring gene neural proliferation, differentiation and control, 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
chloride intracellular channel protein 3
Names
chloride intracellular channel protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001201189.1 → NP_001188118.1  chloride intracellular channel protein 3

    See identical proteins and their annotated locations for NP_001188118.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588618
    UniProtKB/TrEMBL
    E3TE38
    Related
    ENSIPUP00000012859.1, ENSIPUT00000013398.1
    Conserved Domains (3) summary
    TIGR00862
    Location:5 → 237
    O-ClC; intracellular chloride channel protein
    cd03061
    Location:3 → 92
    GST_N_CLIC; GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated ...
    cl02776
    Location:99 → 230
    GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030433.2 Reference Coco_2.0 Primary Assembly

    Range
    3193948..3200368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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