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c1d C1D nuclear receptor corepressor [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528460, updated on 8-Mar-2024

Summary

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Gene symbol
c1d
Gene description
C1D nuclear receptor corepressor
See related
Ensembl:ENSIPUG00000018661
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 3 NC_030418.2 (9046602..9057797, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) Unplaced Scaffold NW_016097987.1 (299045..310224, complement)

Chromosome 3 - NC_030418.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128632709 Neighboring gene tubulin beta chain Neighboring gene uncharacterized LOC128632711 Neighboring gene cofilin 1 (non-muscle), like Neighboring gene carboxy-terminal kinesin 2 Neighboring gene uncharacterized LOC128632710

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D
Names
C1D nuclear receptor co-repressor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200730.1 → NP_001187659.1  nuclear nucleic acid-binding protein C1D

    See identical proteins and their annotated locations for NP_001187659.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588996
    UniProtKB/TrEMBL
    E3TF62
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 94
    Sas10_Utp3; Sas10/Utp3/C1D family

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030418.2 Reference Coco_2.0 Primary Assembly

    Range
    9046602..9057797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017461857.3 → XP_017317346.1  nuclear nucleic acid-binding protein C1D isoform X1

    UniProtKB/TrEMBL
    A0A2D0QHN6

  2. XM_017461858.3 → XP_017317347.1  nuclear nucleic acid-binding protein C1D isoform X2

    UniProtKB/TrEMBL
    A0A2D0QGA0
    Related
    ENSIPUP00000027563.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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