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hnf4a hepatocyte nuclear factor 4, alpha [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100528306, updated on 8-Mar-2024

Summary

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Gene symbol
hnf4a
Gene description
hepatocyte nuclear factor 4, alpha
See related
Ensembl:ENSIPUG00000021425
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 15 NC_030430.2 (3204067..3208938)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 15 NC_030430.1 (3021518..3043911)

Chromosome 15 - NC_030430.2Genomic Context describing neighboring genes Neighboring gene fat storage inducing transmembrane protein 2 Neighboring gene R3H domain containing-like Neighboring gene tocopherol (alpha) transfer protein-like Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor gamma Neighboring gene adenosine deaminase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). Chen F, et al. PLoS One, 2010 Jul 12. PMID 20634964, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 4-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200576.1 → NP_001187505.1  hepatocyte nuclear factor 4-alpha

    See identical proteins and their annotated locations for NP_001187505.1

    Status: PROVISIONAL

    Source sequence(s)
    GU588776
    UniProtKB/TrEMBL
    E3TEJ4
    Related
    ENSIPUP00000031970.1, ENSIPUT00000033238.1
    Conserved Domains (2) summary
    cd06931
    Location:142 → 363
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:51 → 126
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030430.2 Reference Coco_2.0 Primary Assembly

    Range
    3204067..3208938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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