These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001199781.1 → NP_001186710.1 POC1B-GALNT4 protein isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1), which shares sequence identity with the products of both the POC1B and GALNT4 genes.
- Source sequence(s)
-
AC010201, AC025034, BX647258
- Consensus CDS
-
CCDS55860.1
- UniProtKB/TrEMBL
-
F8VUJ3
- Related
- ENSP00000447852, OTTHUMP00000245832, ENST00000548729, OTTHUMT00000413016
- Conserved Domains (4) summary
-
- cd00161
Location:443 – 573
Blast Score: 236
- RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
- COG0463
Location:131 – 256
Blast Score: 140
- WcaA; Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
- cd02510
Location:135 – 429
Blast Score: 1179
- pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans.
- pfam00652
Location:442 – 571
Blast Score: 268
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
-
NM_001199782.1 → NP_001186711.1 POC1B-GALNT4 protein isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate upstream start codon, differs in the 5' coding region, and uses an alternate splice site in the 3' coding region, compared to variant 1. The encoded isoform (2) shares sequence identity with the GALNT4 gene product only, has a distinct N-terminus, and is shorter than isoform 1.
- Source sequence(s)
-
AC010201, AC025034, AK297677, BX647258
- Consensus CDS
-
CCDS55861.1
- UniProtKB/Swiss-Prot
-
Q8N4A0
- Conserved Domains (3) summary
-
- cd00161
Location:274 – 404
Blast Score: 231
- RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
- pfam00652
Location:273 – 402
Blast Score: 259
- Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
- cl11394
Location:136 – 260
Blast Score: 547
- Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold.
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000012.11 Reference GRCh37.p10 Primary Assembly
- Range
- 89913189..89920039, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000144.1 Alternate HuRef
- Range
- 86979065..86985916, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018923.1 Alternate CHM1_1.0
- Range
- 89760828..89767679, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)