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CLIP3 CAP-Gly domain containing linker protein 3 [ Sus scrofa (pig) ]

Gene ID: 100524809, updated on 8-Mar-2024

Summary

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Official Symbol
CLIP3provided by VGNC
Official Full Name
CAP-Gly domain containing linker protein 3provided by VGNC
Primary source
VGNC:VGNC:97931
See related
Ensembl:ENSSSCG00000002921
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CLIPR-59
Expression
Broad expression in ovary (RPKM 10.1), mixtures (RPKM 4.3) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLIP3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (45390656..45418866, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (40793340..40809756, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene spectrin repeat containing nuclear envelope family member 4 Neighboring gene alkB homolog 6 Neighboring gene THAP domain containing 8 Neighboring gene WD repeat domain 62 Neighboring gene ovo like zinc finger 3 Neighboring gene RNA polymerase II subunit I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 3
Names
CLIP-170-related protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    45390656..45418866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097159.1 → XP_020952818.1  CAP-Gly domain-containing linker protein 3

    UniProtKB/TrEMBL
    A0A4X1TEX7, A0A8D1C3V4, F1RLF4, I3LGS7
    Related
    ENSSSCP00000023271.2, ENSSSCT00000022327.4
    Conserved Domains (3) summary
    cd00204
    Location:112 → 234
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:120 → 157
    ANK; ANK repeat [structural motif]
    pfam01302
    Location:418 → 482
    CAP_GLY; CAP-Gly domain

  2. XM_021097158.1 → XP_020952817.1  CAP-Gly domain-containing linker protein 3

    UniProtKB/TrEMBL
    A0A4X1TEX7, A0A8D1C3V4, F1RLF4, I3LGS7
    Conserved Domains (3) summary
    cd00204
    Location:112 → 234
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:120 → 157
    ANK; ANK repeat [structural motif]
    pfam01302
    Location:418 → 482
    CAP_GLY; CAP-Gly domain
Nucleotide Protein
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