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SOX13 SRY-box transcription factor 13 [ Sus scrofa (pig) ]

Gene ID: 100524269, updated on 8-Mar-2024

Summary

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Official Symbol
SOX13provided by VGNC
Official Full Name
SRY-box transcription factor 13provided by VGNC
Primary source
VGNC:VGNC:93352
See related
Ensembl:ENSSSCG00000015277
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 7.3), subcutaneous adipose (RPKM 3.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (64745762..64780942)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (71086586..71142049, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 11A Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene ethanolamine kinase 2 Neighboring gene renin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: transcription factor SOX-13
Names
SRY-box 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    64745762..64780942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021063210.1 → XP_020918869.1  LOW QUALITY PROTEIN: transcription factor SOX-13

    UniProtKB/TrEMBL
    A0A8D1RPI7, A0A8D1W5A7
    Related
    ENSSSCP00000061586.2, ENSSSCT00000070526.2
    Conserved Domains (2) summary
    cd01388
    Location:467 → 538
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    cl25800
    Location:269 → 374
    GGN; Gametogenetin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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