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UTP20 UTP20 small subunit processome component [ Sus scrofa (pig) ]

Gene ID: 100524087, updated on 8-Mar-2024

Summary

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Official Symbol
UTP20provided by VGNC
Official Full Name
UTP20 small subunit processome componentprovided by VGNC
Primary source
VGNC:VGNC:94784
See related
Ensembl:ENSSSCG00000000869
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 7.9), kidney (RPKM 7.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
62
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (82810700..82913176, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (86806041..86907727, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260787 Neighboring gene myosin binding protein C1 Neighboring gene Spi-C transcription factor Neighboring gene ADP ribosylation factor like GTPase 1 Neighboring gene uncharacterized LOC102164671 Neighboring gene solute carrier family 5 member 8 Neighboring gene anoctamin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small subunit processome component 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    82810700..82913176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005664203.3 → XP_005664260.1  small subunit processome component 20 homolog

    UniProtKB/TrEMBL
    A0A4X1SZD0
    Related
    ENSSSCP00000000929.3, ENSSSCT00000000949.5
    Conserved Domains (1) summary
    pfam07539
    Location:912 → 1529
    DRIM; Down-regulated in metastasis
Nucleotide Protein
Heading Accession and Version

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