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AFF3 ALF transcription elongation factor 3 [ Sus scrofa (pig) ]

Gene ID: 100522606, updated on 8-Mar-2024

Summary

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Gene symbol
AFF3
Gene description
ALF transcription elongation factor 3
See related
Ensembl:ENSSSCG00000055832
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in spleen (RPKM 3.6), lung (RPKM 1.4) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
31
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (54135476..54730201)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (56762725..57316245)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene spermatogenesis-associated protein 31E1-like Neighboring gene carbohydrate sulfotransferase 10 Neighboring gene LON peptidase N-terminal domain and ring finger 2 Neighboring gene uncharacterized LOC106509762 Neighboring gene REV1 DNA directed polymerase Neighboring gene eukaryotic translation initiation factor 5B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    54135476..54730201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021088183.1 → XP_020943842.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1264
    AF-4; AF-4 proto-oncoprotein

  2. XM_021088185.1 → XP_020943844.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1264
    AF-4; AF-4 proto-oncoprotein

  3. XM_021088184.1 → XP_020943843.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1264
    AF-4; AF-4 proto-oncoprotein

  4. XM_021088187.1 → XP_020943846.1  AF4/FMR2 family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1263
    AF-4; AF-4 proto-oncoprotein

  5. XM_021088188.1 → XP_020943847.1  AF4/FMR2 family member 3 isoform X3

    UniProtKB/TrEMBL
    A0A287ABS3, A0A4X1VX31, A0A8D1X0H1
    Related
    ENSSSCP00000041334.2, ENSSSCT00000064001.3
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1246
    AF-4; AF-4 proto-oncoprotein

  6. XM_021088189.1 → XP_020943848.1  AF4/FMR2 family member 3 isoform X4

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1245
    AF-4; AF-4 proto-oncoprotein

  7. XM_021088191.1 → XP_020943850.1  AF4/FMR2 family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A4X1W2G4, A0A8D1X0H1, F1STF1, F1STF2
    Related
    ENSSSCP00000008730.3, ENSSSCT00000008956.5
    Conserved Domains (1) summary
    pfam05110
    Location:23 → 1221
    AF-4; AF-4 proto-oncoprotein

  8. XM_021088186.1 → XP_020943845.1  AF4/FMR2 family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:48 → 1264
    AF-4; AF-4 proto-oncoprotein

  9. XM_021088190.1 → XP_020943849.1  AF4/FMR2 family member 3 isoform X5

    UniProtKB/TrEMBL
    A0A8D1X0H1
    Conserved Domains (1) summary
    pfam05110
    Location:23 → 1239
    AF-4; AF-4 proto-oncoprotein

  10. XM_021088196.1 → XP_020943855.1  AF4/FMR2 family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1161
    AF-4; AF-4 proto-oncoprotein

  11. XM_021088195.1 → XP_020943854.1  AF4/FMR2 family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1161
    AF-4; AF-4 proto-oncoprotein

  12. XM_021088197.1 → XP_020943856.1  AF4/FMR2 family member 3 isoform X8

    UniProtKB/TrEMBL
    A0A8D0N0S9, A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1143
    AF-4; AF-4 proto-oncoprotein

  13. XM_021088198.1 → XP_020943857.1  AF4/FMR2 family member 3 isoform X9

    UniProtKB/TrEMBL
    A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1142
    AF-4; AF-4 proto-oncoprotein

  14. XM_021088194.1 → XP_020943853.1  AF4/FMR2 family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1161
    AF-4; AF-4 proto-oncoprotein

  15. XM_021088192.1 → XP_020943851.1  AF4/FMR2 family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A8D0N2F5
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1161
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
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