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ARID3B AT-rich interaction domain 3B [ Sus scrofa (pig) ]

Gene ID: 100521805, updated on 8-Mar-2024

Summary

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Official Symbol
ARID3Bprovided by VGNC
Official Full Name
AT-rich interaction domain 3Bprovided by VGNC
Primary source
VGNC:VGNC:85508
See related
Ensembl:ENSSSCG00000001905
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 3.8), spleen (RPKM 3.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (58932450..58998707, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (63604350..63659306, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene enhancer of mRNA decapping 3 Neighboring gene uncharacterized LOC110261565 Neighboring gene CDC like kinase 3 Neighboring gene translation initiation factor IF-2 Neighboring gene ubiquitin like 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    58932450..58998707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099056.1 → XP_020954715.1  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3B

    UniProtKB/TrEMBL
    A0A4X1TPX5
    Related
    ENSSSCP00000076302.1, ENSSSCT00000095398.1
    Conserved Domains (1) summary
    smart00501
    Location:223 → 312
    BRIGHT; ARID (A/T-rich interaction domain) domain
Nucleotide Protein
Heading Accession and Version

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