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LIG1 ligase I, DNA, ATP-dependent [ Sus scrofa (pig) ]

Gene ID: 100520434, updated on 24-Jan-2015
Gene symbol
LIG1
Gene description
ligase I, DNA, ATP-dependent
See related
Ensembl:ENSSSCG00000003128
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Orthologs
See LIG1 in MapViewer
Location:
chromosome: 6
Exon count:
30
Annotation release Status Assembly Chr Location
104 current Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (49204975..49271291, complement)

Chromosome 6 - NC_010448.3Genomic Context describing neighboring genes Neighboring gene epididymal sperm binding protein 1 Neighboring gene calcium binding protein 5 Neighboring gene chromosome 6 open reading frame, human C19orf68 Neighboring gene zinc finger protein 34-like Neighboring gene uncharacterized LOC102165764 Neighboring gene vomeronasal type-1 receptor 1-like

Genomic Sequence:
NC_010448.3 chromosome 6 reference Sscrofa10.2 Primary Assembly

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa10.2 Primary Assembly

Genomic

  1. NC_010448.3 

    Range
    49204975..49271291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005664648.1XP_005664705.1  

    See proteins identical to XP_005664705.1

    Conserved Domains (4) summary
    cd07969
    Location:757902
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:534752
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    pfam04675
    Location:290462
    DNA_ligase_A_N; DNA ligase N terminus
    TIGR00574
    Location:349901
    DNA_ligase; DNA ligase I, ATP-dependent (dnl1)
  2. XM_005664647.1XP_005664704.1  

    See proteins identical to XP_005664704.1

    Conserved Domains (4) summary
    cd07969
    Location:757902
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:534752
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    pfam04675
    Location:290462
    DNA_ligase_A_N; DNA ligase N terminus
    TIGR00574
    Location:349901
    DNA_ligase; DNA ligase I, ATP-dependent (dnl1)
  3. XM_003127267.2XP_003127315.1  

    Related
    ENSSSCP00000003386, ENSSSCT00000003469
    Conserved Domains (4) summary
    cd07969
    Location:756901
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:533751
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:192918
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:289461
    DNA_ligase_A_N; DNA ligase N terminus