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N4BP1 NEDD4 binding protein 1 [ Sus scrofa (pig) ]

Gene ID: 100520431, updated on 8-Mar-2024

Summary

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Official Symbol
N4BP1provided by VGNC
Official Full Name
NEDD4 binding protein 1provided by VGNC
Primary source
VGNC:VGNC:90553
See related
Ensembl:ENSSSCG00000002841
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in lung (RPKM 17.0), subcutaneous adipose (RPKM 9.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See N4BP1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (36122189..36177965)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (31414695..31466654)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene cerebellin 1 precursor Neighboring gene uncharacterized LOC106508311 Neighboring gene uncharacterized LOC106510502 Neighboring gene uncharacterized LOC102163610 Neighboring gene uncharacterized LOC106507585

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NEDD4-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    36122189..36177965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003126990.5 → XP_003127038.2  NEDD4-binding protein 1

    UniProtKB/TrEMBL
    A0A480JBD8, A0A8D0Y0T0, A0A8D1EG07, A0A8D1L2A8, A0A8D1PG03, A0A8D2A0C7, F1REY3
    Related
    ENSSSCP00000003061.3, ENSSSCT00000003142.5
    Conserved Domains (1) summary
    pfam11977
    Location:617 → 770
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
Nucleotide Protein
Heading Accession and Version

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