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AKAP8L A-kinase anchoring protein 8 like [ Sus scrofa (pig) ]

Gene ID: 100518955, updated on 8-Mar-2024

Summary

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Official Symbol
AKAP8Lprovided by VGNC
Official Full Name
A-kinase anchoring protein 8 likeprovided by VGNC
Primary source
VGNC:VGNC:85224
See related
Ensembl:ENSSSCG00000013838
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 4.9), kidney (RPKM 4.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AKAP8L in Genome Data Viewer
Location:
chromosome: 2
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (62184735..62241631)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (61760062..61797260)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 3 Neighboring gene WIZ zinc finger Neighboring gene uncharacterized LOC110259330 Neighboring gene A-kinase anchoring protein 8 Neighboring gene alanine and glycine-rich protein-like Neighboring gene bromodomain containing 4 Neighboring gene epoxide hydrolase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase A regulatory subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A-kinase anchor protein 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    62184735..62241631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123432.4 → XP_003123480.1  A-kinase anchor protein 8-like isoform X1

    See identical proteins and their annotated locations for XP_003123480.1

    UniProtKB/TrEMBL
    A0A0B8RT94, A0A4X1VG59, A0A4X1VLL8, A0A8D0XUM5
    Related
    ENSSSCP00000066716.1, ENSSSCT00000077269.2
    Conserved Domains (1) summary
    pfam04988
    Location:389 → 553
    AKAP95; A-kinase anchoring protein 95 (AKAP95)

  2. XM_005652898.3 → XP_005652955.1  A-kinase anchor protein 8-like isoform X2

    UniProtKB/TrEMBL
    A0A287B168, A0A480SCR1, A0A480T358, A0A4X1VK63, A0A8D1JTZ6
    Related
    ENSSSCP00000050170.2, ENSSSCT00000058689.3
    Conserved Domains (1) summary
    pfam04988
    Location:328 → 492
    AKAP95; A-kinase anchoring protein 95 (AKAP95)

  3. XM_021083628.1 → XP_020939287.1  A-kinase anchor protein 8-like isoform X4

    Conserved Domains (1) summary
    pfam04988
    Location:389 → 469
    AKAP95; A-kinase anchoring protein 95 (AKAP95)

  4. XM_021083627.1 → XP_020939286.1  A-kinase anchor protein 8-like isoform X3

    UniProtKB/TrEMBL
    A0A5G2QU62
    Related
    ENSSSCP00000065536.2, ENSSSCT00000080221.2
    Conserved Domains (1) summary
    pfam04988
    Location:389 → 512
    AKAP95; A-kinase anchoring protein 95 (AKAP95)

  5. XM_021083629.1 → XP_020939288.1  A-kinase anchor protein 8-like isoform X4

    Conserved Domains (1) summary
    pfam04988
    Location:389 → 469
    AKAP95; A-kinase anchoring protein 95 (AKAP95)
Nucleotide Protein Strain
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