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PRTFDC1 phosphoribosyl transferase domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 100518211, updated on 8-Mar-2024

Summary

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Official Symbol
PRTFDC1provided by VGNC
Official Full Name
phosphoribosyl transferase domain containing 1provided by VGNC
Primary source
VGNC:VGNC:95996
See related
Ensembl:ENSSSCG00000028135
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 13.7), lung (RPKM 7.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (50365654..50458487)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (55787876..55911201)

Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene threonine synthase like 1 Neighboring gene enkurin, TRPC channel interacting protein Neighboring gene uncharacterized LOC102166393 Neighboring gene uncharacterized LOC110255696 Neighboring gene uncharacterized LOC106507918 Neighboring gene uncharacterized LOC110255697

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hypoxanthine phosphoribosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in purine ribonucleoside salvage IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoribosyltransferase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

    Range
    50365654..50458487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003130768.5 → XP_003130816.5  phosphoribosyltransferase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A287AN84
    Related
    ENSSSCP00000045356.3, ENSSSCT00000064059.3
    Conserved Domains (1) summary
    cl00309
    Location:106 → 333
    PRTases_typeI; Phosphoribosyl transferase (PRT)-type I domain

  2. XM_013989731.2 → XP_013845185.2  phosphoribosyltransferase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A287AN84
    Conserved Domains (1) summary
    cl00309
    Location:106 → 293
    PRTases_typeI; Phosphoribosyl transferase (PRT)-type I domain
Nucleotide Protein
Heading Accession and Version

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