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AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Sus scrofa (pig) ]

Gene ID: 100517795, updated on 8-Mar-2024

Summary

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Official Symbol
AP1S2provided by VGNC
Official Full Name
adaptor related protein complex 1 subunit sigma 2provided by VGNC
Primary source
VGNC:VGNC:85382
See related
Ensembl:ENSSSCG00000036074
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 8.7), heart (RPKM 8.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See AP1S2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (12367785..12397672, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (13312013..13341898, complement)

Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106506903 Neighboring gene uncharacterized LOC110257733 Neighboring gene carbonic anhydrase 5B Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene uncharacterized LOC106506905 Neighboring gene non-histone chromosomal protein HMG-14 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 sigma 2 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

    Range
    12367785..12397672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003134953.5 → XP_003135001.2  AP-1 complex subunit sigma-2 isoform X3

    See identical proteins and their annotated locations for XP_003135001.2

    UniProtKB/TrEMBL
    A0A287BBP6, A0A4X1UYB3, A0A5G2R8Q1, A0A8D1K6F2
    Related
    ENSSSCP00000072693.1, ENSSSCT00000081951.2
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  2. XM_005673453.2 → XP_005673510.1  AP-1 complex subunit sigma-2 isoform X1

    See identical proteins and their annotated locations for XP_005673510.1

    UniProtKB/TrEMBL
    A0A287BBP6, A0A4X1UX87, A0A5G2RGZ5, A0A8D0J5F4
    Related
    ENSSSCP00000070550.1, ENSSSCT00000068080.2
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

  3. XM_005673456.3 → XP_005673513.1  AP-1 complex subunit sigma-2 isoform X4

    See identical proteins and their annotated locations for XP_005673513.1

    UniProtKB/TrEMBL
    A0A287BBP6
    Conserved Domains (1) summary
    cd14831
    Location:2 → 142
    AP1_sigma; AP-1 complex subunit sigma

  4. XM_005673454.3 → XP_005673511.1  AP-1 complex subunit sigma-2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1UX92, A0A8D0JGX3, A0A8D1ISC8, A0A8D1UV47
    Related
    ENSSSCP00000053766.3, ENSSSCT00000065448.3
    Conserved Domains (1) summary
    pfam01217
    Location:1 → 141
    Clat_adaptor_s; Clathrin adaptor complex small chain

RNA

  1. XR_002340566.1 RNA Sequence

  2. XR_002340567.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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