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LSR lipolysis stimulated lipoprotein receptor [ Sus scrofa (pig) ]

Gene ID: 100516738, updated on 8-Mar-2024

Summary

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Official Symbol
LSRprovided by VGNC
Official Full Name
lipolysis stimulated lipoprotein receptorprovided by VGNC
Primary source
VGNC:VGNC:98495
See related
Ensembl:ENSSSCG00000002884
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 25.2), liver (RPKM 15.4) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (44759091..44773378)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (40183120..40192827)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 5 Neighboring gene family with sequence similarity 187 member B Neighboring gene protein FAM187B-like Neighboring gene upstream transcription factor 2, c-fos interacting Neighboring gene hepcidin antimicrobial peptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in establishment of blood-brain barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in tricellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: lipolysis-stimulated lipoprotein receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    44759091..44773378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021097147.1 → XP_020952806.1  LOW QUALITY PROTEIN: lipolysis-stimulated lipoprotein receptor

    UniProtKB/TrEMBL
    A0A8D0JTI6
    Related
    ENSSSCP00000003105.4, ENSSSCT00000003186.5
    Conserved Domains (1) summary
    cl28310
    Location:365 → 540
    Rho; Transcription termination factor Rho [Transcription]
Nucleotide Protein
Heading Accession and Version

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