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YIPF7 Yip1 domain family member 7 [ Sus scrofa (pig) ]

Gene ID: 100516500, updated on 8-Mar-2024

Summary

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Gene symbol
YIPF7
Gene description
Yip1 domain family member 7
See related
Ensembl:ENSSSCG00000053220
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in heart (RPKM 26.9), psoas major muscle (RPKM 22.5) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (35135338..35161003, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (36840802..36866752, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene HAUS augmin-like complex subunit 3 pseudogene Neighboring gene potassium channel tetramerization domain containing 8 Neighboring gene uncharacterized LOC106504638 Neighboring gene glucosamine-6-phosphate deaminase 2 Neighboring gene GTP binding elongation factor GUF1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein YIPF7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    35135338..35161003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013978640.2 → XP_013834094.1  protein YIPF7

    UniProtKB/TrEMBL
    A0A4X1UM29, A0A8D0JFC8, A0A8D1J933, A0A8D1KBJ4, F1S3T2
    Related
    ENSSSCP00000009387.2, ENSSSCT00000009636.5
    Conserved Domains (1) summary
    cl21557
    Location:31 → 255
    Yip1; Yip1 domain
Nucleotide Protein
Heading Accession and Version

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