U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SUMF1 sulfatase modifying factor 1 [ Sus scrofa (pig) ]

Gene ID: 100514188, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SUMF1provided by VGNC
Official Full Name
sulfatase modifying factor 1provided by VGNC
Primary source
VGNC:VGNC:93617
See related
Ensembl:ENSSSCG00000011532
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 64.1), ovary (RPKM 45.4) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (60946718..61037298, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (67255357..67345941, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256477 Neighboring gene uncharacterized LOC110255178 Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene uncharacterized LOC106505661 Neighboring gene SUMO-conjugating enzyme UBC9 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
formylglycine-generating enzyme; sulfatase-modifying factor 1
Names
sulfatase-modifying factor
NP_001231861.1
XP_013837365.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244932.1 → NP_001231861.1  formylglycine-generating enzyme precursor

    Status: VALIDATED

    Source sequence(s)
    AK351541
    UniProtKB/TrEMBL
    A0A286ZTV6, A0A480WFL8, A0A8D0PW98, A0A8D0ZT85
    Related
    ENSSSCP00000035016.1, ENSSSCT00000061387.3
    Conserved Domains (2) summary
    COG1262
    Location:65 → 368
    YfmG; Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones]
    pfam03781
    Location:87 → 367
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    60946718..61037298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013981911.2 → XP_013837365.2  sulfatase-modifying factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A287AQV8
    Conserved Domains (1) summary
    pfam03781
    Location:116 → 309
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.