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THBS4 thrombospondin 4 [ Sus scrofa (pig) ]

Gene ID: 100513005, updated on 8-Mar-2024

Summary

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Official Symbol
THBS4provided by VGNC
Official Full Name
thrombospondin 4provided by VGNC
Primary source
VGNC:VGNC:93949
See related
Ensembl:ENSSSCG00000014117
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in subcutaneous adipose (RPKM 111.8), longissimus dorsi muscle (RPKM 31.4) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (88729531..88780759)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (90502359..90549528)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106509485 Neighboring gene metaxin 3 Neighboring gene uncharacterized LOC110259409 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene serine incorporator 5 Neighboring gene spermatogenic leucine zipper 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: thrombospondin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    88729531..88780759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021084490.1 → XP_020940149.1  LOW QUALITY PROTEIN: thrombospondin-4

    UniProtKB/TrEMBL
    A0A480QIU2, A0A5G2QTC8
    Related
    ENSSSCP00000068181.1, ENSSSCT00000085010.1
    Conserved Domains (9) summary
    smart00179
    Location:379 → 410
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:326 → 361
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:591 → 613
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:496 → 531
    TSP3; TSP3 repeat_long [structural motif]
    cd16080
    Location:219 → 262
    TSP-4cc; Coiled coil region of thrombospondin-4 (TSP-4)
    pfam00008
    Location:290 → 320
    EGF; EGF-like domain
    pfam02412
    Location:496 → 531
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:745 → 942
    TSP_C; Thrombospondin C-terminal region
    cl22861
    Location:24 → 192
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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