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JMJD4 jumonji domain containing 4 [ Sus scrofa (pig) ]

Gene ID: 100512588, updated on 8-Mar-2024

Summary

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Official Symbol
JMJD4provided by VGNC
Official Full Name
jumonji domain containing 4provided by VGNC
Primary source
VGNC:VGNC:89286
See related
Ensembl:ENSSSCG00000013983
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.1), kidney (RPKM 9.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (50804797..50812180, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (54412692..54420077)

Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene olfactory receptor 8K3-like Neighboring gene proteasome subunit beta type-5 pseudogene Neighboring gene synaptosome associated protein 47 Neighboring gene serine protease 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
jmjC domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

    Range
    50804797..50812180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003123609.5 → XP_003123657.2  jmjC domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_003123657.2

    UniProtKB/TrEMBL
    A0A0B8RVS8, A0A4X1UHJ0, A0A8D0J3Y1, A0A8D1KCD2, A0A8D1NLS4, F1S5T5
    Related
    ENSSSCP00000014867.2, ENSSSCT00000015273.5
    Conserved Domains (1) summary
    cl21464
    Location:42 → 285
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_005661157.3 → XP_005661214.1  jmjC domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8D0J3Y1, A0A8D1KCD2, A0A8D1NLS4
    Conserved Domains (1) summary
    cl21464
    Location:42 → 273
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein Strain
Heading Accession and Version

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